Survival of Escherichia coli in the environment: fundamental and public health aspects

In this review, our current understanding of the species Escherichia coli and its persistence in the open environment is examined. E. coli consists of six different subgroups, which are separable by genomic analyses. Strains within each subgroup occupy various ecological niches, and can be broadly characterized by either commensalistic or different pathogenic behaviour. In relevant cases, genomic islands can be pinpointed that underpin the behaviour. Thus, genomic islands of, on the one hand, broad environmental significance, and, on the other hand, virulence, are highlighted in the context of E. coli survival in its niches. A focus is further placed on experimental studies on the survival of the different types of E. coli in soil, manure and water. Overall, the data suggest that E. coli can persist, for varying periods of time, in such terrestrial and aquatic habitats. In particular, the considerable persistence of the pathogenic E. coli O157:H7 is of importance, as its acid tolerance may be expected to confer a fitness asset in the more acidic environments. In this context, the extent to which E. coli interacts with its human/animal host and the organism''s survivability in natural environments are compared. In addition, the effect of the diversity and community structure of the indigenous microbiota on the fate of invading E. coli populations in the open environment is discussed. Such a relationship is of importance to our knowledge of both public and environmental health.     

Effects of the level of early productivity on the lifespan of ewes in contrasting flock environments

Selection for high levels of prolificacy has allowed substantial improvements in the production efficiency of New Zealand (NZ) sheep farms, but the consequences on ewe lifetime performance are mostly unknown. In this study, the relationship between the level of prolificacy early in ewes’ productive lives and their probability to survive later (i.e. stayability) was evaluated in two contrasting NZ flock environments. Records were obtained from 6605 ewes from four ram breeder flocks representing either a moderate (n=2) or a highly variable (n=2) nutritional environment. All ewes lambed for the first time at 2 years of age and were mated the following year. The number of lambs born during the first 2 years of productive life (NLB_2–3) was used as a measure of early prolificacy. Effects of NLB_2–3 on stayability to 4, 5, 6, 7 and 8 years old were analysed using logistic regression. Curvilinear effects (logit-transformed) were detected (P<0.05) until stayability to 6 years and to 8 years old in the highly variable and the moderate environment, respectively. The NLB_2–3 that resulted in maximum expected stayability to various ages was 3.9 to 4.2, and 4.5 to 4.7 lambs in the highly variable and in the moderate flock environments, respectively. In addition, ewe stayability was reduced when the proportion of the litter that survived from birth to weaning (i.e. ewe rearing ability) was submaximal during the early productive life. High prolific ewes had a low rearing ability whatever the environment whereas the rearing ability of lowly prolific ewes was apparently more sensitive to the nutritional environment. The poor maternal performance of ewes with low levels of NLB_2–3 led to a premature culling by breeders whereas the high early reproductive effort associated with high levels of NLB_2–3 seemed to be at the cost of ewes’ survival, even in the moderate flock environment. In conclusion, the flock environment influenced the level of early prolificacy beyond which ewe longevity was reduced. It is suggested that further selection for high and early prolificacy in NZ flocks is likely to impair ewes’ lifetime productivity.     

Chemical and biological mobilization of Fe(III) in marsh sediments

Iron reduction in marine sulfitic environments may occur via a mechanism involving direct bacterial reduction with the use of hydrogen as an electron donor, direct bacterial reduction involving carbon turnover, or by indirect reduction where sulfide acts to reduce iron. In the presented experiments, the relative importance of direct and indirect mechanisms of iron reduction, and the contribution of these two mechanisms to overall carbon turnover has been evaluated in two marsh environments. Sediments collected from two Northeastern US salt marshes each having different Fe (III) histories were incubated with the addition of reactive iron (as amorphous oxyhydroxide). These sediments were either incubated alone or in conjunction with sodium molybdate. Production of both inorganic and organic pore water constituents and a calculation of net carbon production were used as measures to compare the relative importance of direct bacterial reduction and indirect bacterial reduction. Results indicate that in the environments tested, the majority of the reduced iron found results from indirect reduction mediated by hydrogen sulfide, a result of dissolution and precipitation phenomena, or is a result of direct bacterial reduction using hydrogen as an electron donor. Direct iron reduction plays a minor role in carbon turnover in these environments.     

Genotype by environment interaction in the assessment of tolerance of partially resistant potato clones to potato cyst nematodes

Genotype by environment interactions in a number of field trials in different years are examined in relation to tolerance of potato cyst nematodes and the subsequent yield losses. A biplot technique is used to display the interaction effects graphically and facilitate identification of any patterns in the data. The results are assessed and discussed in relation to breeding strategies and the variation found between different nematode populations.     

A molecular dynamics study of the stoichiometric complex formed by poly (alpha, L-glutamate) and octyltrimethylammonium ions in chloroform solution.

We present a molecular dynamics simulation at 300 K in explicit solvent environment of chloroform of the stoichiometric complex formed by poly(alpha,L-glutamate) and octyltrimethylammonium ions. We observed that the alpha-helix conformation of the polypeptide chain remains stable during a 2-ns run. The surfactant ions predominantly adopted an extended conformation that is stabilized by favorable interactions with the organic solvent. Analysis of the organization of the surfactant with respect to the polypeptide chain indicated that each octyltrimethylammonium cation was preferentially bound to more than one carboxylate group. It was found that the most populated arrangement was that with the surfactant cations interacting with two carboxylate groups simultaneously.     

Trophic Structure of One Deep-sea Benthic Fish Community in the Eastern Canadian Arctic: Application of Food, Parasites and Multivariate Analysis

Synopsis As new arctic marine fisheries develop there is need for a comprehensive ecosystem approach to long-term management. This approach recognizes the importance of community interactions such as food web structure and trophic patterns. We determined whether hierarchical clustering (guild formation) is an effective method of trophic evaluation in deep-sea Artic fish communities using stomach content and parasite data with size class, and evaluated the application of endohelminth communities (parasite species transmitted in the food) as indicators of trophic status. Cluster analysis using food group abundance with size class of fish revealed the presence of 11 guilds within the community, however the same analysis using parasite data showed little correlation between food and parasites. Redundancy analysis (RDA) within the 11 guilds also revealed no significant correlations between food group and parasite abundance suggesting that this type of ordination is not suited for environments containing mainly generalist feeders. RDA of individual taxa without a priori guild designation found that taxa in benthic deep-sea communities are defined by their ability to exploit prey species in more than one habitat zone. Benthic fish species were significantly correlated with benthic food groups and parasites that utilize benthic intermediate hosts whereas benthopelagic–pelagic species fed on a higher diversity of prey species and were infected by a larger number of non-host specific parasites. Eigenanalysis and Monte Carlo results showed that parasites and food groups are highly correlated, indicating that parasite community analysis is an effective tool for predicting feeding strategies in Arctic marine environments. It also suggests that in most cases endoparasite infections alone could be used for trophic evaluation in the absence of stomach content data.     

A study on nitrate reductase activity (NRA) of geophytes from Mediterranean environment

Nitrate reductase activity (NRA) in different compartments of 14 Mediterranean geophytes (bulbous, tuberous and rhizomatous) and actual mineral nitrogen (NO₃⁻ and NH₄⁺) in their soils were investigated. The nitrate reduction capacities of each species were determined as NRA per total plant material. Differences among compartments for NRA were significant in all species. The highest NRA was found in leaves of tuberous species (Anemone coronaria, Cyclamen coum) and of most bulbous species (Allium flavum, Allium guttatum, Bellevelia sarmatica, Galanthus plicatus, Leucojum aestivum, Ornithogalum nutans, Tulipa sylvestris). Therefore, in this group of species the contribution of the leaves to total plant NRA was the highest. The other bulbous species (Allium scorodoprasum, Crocus chrysanthus, Fritillaria bithynica, Muscari neglectum) and one rhizomatous taxon (Iris suaveolens) have a different NRA distribution within the plants. In these species the highest values of NRA were found in different organs. For example, in Allium scorodoprasum the highest NRA was in tunics, and in flowers in M. neglectum. Although leaves are the main compartments reducing nitrate in most of the studied geophytes, other compartments also contribute to total plant nitrate reduction.Our results show that the nitrate reduction capacity is different among geophyte species. Even if it roughly reflects the nitrogen supply in a habitat, differences in nitrate reduction capacities of different species collected from same sites indicate that the nitrate reducing capacity is species-specific.     

两种防治措施下转Bt基因棉田绿盲蝽的发生与为害

2002年在河北省南皮县对2种防治措施下转Bt基因田绿盲蝽LyguslucorumMayre的发生与为害进行的系统调查表明,采用生物农药和低毒化学农药防治4次,Bt棉田绿盲蝽的发生为害较为严重,9月上旬发生高峰期种群密度为7.2头10株,显著高于防治指标,第2代绿盲蝽为害高峰期,叶片被害率为19.4%;采用当地棉农化学防治方法施用农药7次,Bt棉田绿盲蝽发生为害较轻,发生高峰期(8月中旬)种群密度为2.0头10株,第2代绿盲蝽为害高峰期,叶片被害率为4.8%。讨论指出绿盲蝽已成为转Bt基因棉生产中的重要问题,应加快绿盲蝽在转Bt基因棉田的生态调控研究。     

土壤乙烯产生和氧化的研究进展

乙烯作为植物生长调节素及挥发性有机气体影响着植物生长和大气环境质量。有关土壤源乙烯产生和氧化特征,已发表的文献偏重实验室过程研究,很少涉及野外观测实验;陆地生态系统中土壤源乙烯行为有可能影响到植物生长及区域大气环境,大气环境变化(如水热状况和氮/酸沉降等)势必引起陆地土壤理化和生物学特性发生改变,进而影响土壤源乙烯产生和氧化过程。根据以前出版的文献,就土壤理化性质及外源碳氮施加、土壤微生物和重金属行为等对影响土壤乙烯产生和氧化作了详细综述,并简要阐述根际土壤乙烯产生和氧化以及不同土地利用方式对土壤乙烯产生和氧化的影响。指出应加强大气氮/酸沉降对典型林地土壤乙烯产生和氧化的影响机制以及不同土地利用方式下土壤乙烯产生和氧化的原位观测等方面的研究;同时也应关注不同成熟林型及森林演替不同阶段土壤理化和生物学特性跟乙烯产生和氧化的关联,明确土壤微生物(如细菌和真菌等)对此的相对贡献程度,利于丰富陆地土壤乙烯产生和氧化等有关科学认识,寻求适宜措施减少陆地土壤源乙烯产生潜势。     

草地早熟禾草坪土壤水分动态与根系生长分布

对草地早熟禾草坪土壤水分动态和根系生长发育状况进行研究,结果发现不同土壤层次水分变化有所不同,0～15cm变化最大,15～30cm次之,30cm以下土层水分变化不大;草地早熟禾的根系生长呈现双峰曲线模式,5月中旬和8月中下旬总根量处于峰值;其主体根系主要分布在0～30cm土层内,占总根量的85%以上;根重密度随土层深度呈指数衰减关系,0～30cm土层下降幅度较大,30cm以下土层根重密度相差不大;在0～30cm土层内不同层次根量占总根量的比例在不同时期亦有差异,春秋季节10～20cm和20～30cm土层内根量比例较大,说明此时期主体根系分布在较深的土层;综合分析认为草地早熟禾草坪主要利用土壤浅层水分,在降雨较少的春秋季节,根系较深,适宜深层灌溉,在降雨频繁的夏季,根系较浅,适宜浅层灌溉。